I have an autopower bolt in cage in my 944, the bottom of the main hoop doesn't go to the rail, it goes all the way to the floor, so if the bottom of your main hoop is outside of that, I would think you would be OK. I measured, and at its widest point, which is about the bottom of the 1/4 windows, the cage is still 2 1/4" away from the side.
Door gutting: 17.2.11 says you can gut the doors, whether your door bars need it or not. So, yes, "freebie"
Inspection: I'd just leave enough room to get a finger up there, so the inspector can't feel the edge of the tube, but instead a weld. Remember you can weld the cage to the A and B pillars, so it isn't that important to get it tight and get a "free" attachment point.